PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn012881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 224aa    MW: 24240.4 Da    PI: 7.7274
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn012881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.51.3e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p +     p++q +++ +v+k+FG++ ++++l+++p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++
  Achn012881   2 SCNGCRVLRKGCSENCILRPSLqwidsPEAQGHATVFVAKFFGRAGLMSFLSSVPLNQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQAAVQT 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  Achn012881 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.241107IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PSLQWIDSPE AQGHATVFVA KFFGRAGLMS FLSSVPLNQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVQT VLRGGALRPI PEFHAGGSLS  120
PPDLDEASEA EVAFPDTFNL HQSPSPTSKA PKRRRVNERA ENRLADLGLS LTPCSAIEET  180
SYKHSAEKRR DGTPSMNSDE SVTTTCFESG RFVSEPKLVN FFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284296.17e-94PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN232e-80LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD7TT888e-94D7TT88_VITVI; Putative uncharacterized protein
STRINGVIT_07s0129g00330.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-81LOB domain-containing protein 38